PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023578m
Common NameCARUB_v10023578mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 337aa    MW: 38026.6 Da    PI: 7.3257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023578mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.4e-27151211259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqKe++gs++pr+YYrCt++   +C + k+v++s++dp+v++++Y g+H+++
  Carubv10023578m 151 DDGHCWRKYGQKEIHGSKNPRAYYRCTHRftqHCLAVKQVQKSDTDPSVFQVKYVGDHTCN 211
                      8***************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-25138212IPR003657WRKY domain
PROSITE profilePS5081121.126145208IPR003657WRKY domain
SuperFamilySSF1182904.71E-23147211IPR003657WRKY domain
SMARTSM007743.0E-33150212IPR003657WRKY domain
PfamPF031063.5E-22151210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MATLTHENSQ LSLSLSPISL RKANSKKIPN FFFLQVNAEM MMEEKLVISE LELGKDLANR  60
LMNNLKHSSS SSSSSSSSDS NKTLISEILR IYQNAIFMLS LNEDKNPLKR RSPDHKDSNF  120
VFKKRKTSSE QQKTEKVKVF VASGQDNGSI DDGHCWRKYG QKEIHGSKNP RAYYRCTHRF  180
TQHCLAVKQV QKSDTDPSVF QVKYVGDHTC NNIASPKATT INFSVSMFGE VNRANVTEHS  240
EDVKPKKPEE VMINLEDLEN KKNIFRTFSF PNHEIENTDW KSNIFTVGEL SPATSGSRIT  300
SEIVSAPASV ENAETADSYF SSLENIIDPD WLWSEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108125KRRSPDHKDSNFVFKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294543.10.0hypothetical protein CARUB_v10023578mg
SwissprotQ9SKD91e-160WRK46_ARATH; Probable WRKY transcription factor 46
TrEMBLR0FXJ80.0R0FXJ8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.4__2854__AT2G46400.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-157WRKY DNA-binding protein 46